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Text File  |  1990-12-05  |  9KB  |  118 lines
  1. Strict Covariation Analysis - 12/5/90
  2.  
  3. FILE : Eliz:JWB stacks:covariation v2.3 ƒ:covariation results
  4.  
  5. 100% match : *
  6. All but 1 match : +
  7. No match : .
  8. Not compared : -
  9. 100% match, but no variation : o
  10.  
  11. Eco UUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCG-ACCUUGAAAU-ACCACCCUUUAA
  12. Pae UGCUUGUGUAGGAUAGGUGGGAGGCUUUGAAGCGUGGACGCCAGUUCGCGUGGAGCCA-UCCUUGAAAU-ACCACCCUGGCA
  13. Bst CGCUUGUACAGGAUAGGUGGGAGCCUGGGAAGCCGGAGCGCCAGCUUCGGUGGAGGCG-GCGGUGGGAU-ACCACCCUGGCG
  14. Bsu AGCUUGUACAGGAUAGGUAGGAGCCUUGGAAACCGGAGCGCCAGCUUCGGUGGAGGCA-UCGGUGGGAU-ACUACCCUGGCU
  15. Ani UGACUGCGCAGGAUAGGUGGGAGGCUAUGAGACUUUCCUUGUGGGGGAAGUGGAGCCA-ACGGUGAGAU-ACCACUCUGUCA
  16. Lin UGUAUGUGUAGGAUAGGUGGGAGGCUAUGAAAUCUGGACGCCAGUCUGGAUGGAGCCG-UCGUUGAAAU-ACCACCCUUACU
  17. Mlu GGCUUGUGUAGGAUAGGUGGGAGACUGUGAAGCGGGCACGCCAGUGUUCGUGGAGUCG-UCGUUGAAAU-ACCACUCUGGUC
  18. Ram UGUCUGUGUAGGAUAGAUGGGAGACAGAGAAGCGAGUACGCCAGUAUUCGUGGAGUCGGCCGGUGAAAU-ACCAUUCUGGGA
  19. Pce GAUCUGUGUAGGAUAGGUGGGAGGCUAUGAAACCGGAACGCUAGUUUCGGUGGAGCCG-UCCUUGAAAU-ACCACCCUGGUU
  20. Rca GUGAUGUGCAGGAUAGGUGGUAGCCUUUGAAACCGUGACGCCAGUUGCGGUGGAGGCU-CCCUUGAGAU-ACCACCCUUCGC
  21. Pma GUUCUGUGUAGGAUAGGUGGGAGGCUUUGAUCUCGGCGCGCCAGCGUCGGAGGAGCCG-UCCUUGAAAU-ACCACCCUGAAU
  22. Sam GGCUUGUGUAGGAUAGCUGGGAGACUUUGAAGCUCGCACGCCAGUGUGGGUGGAGUCG-UCGUUGAAAU-ACCAGUCUGGUC
  23. Tth CGCCUGCGUAGGAUAGGUGGGAGCCUGUGAACCCCCGCCUCCGGGUGGGGGGGAGGCG-CCGGUGAAAU-ACCACCCUGGCG
  24. ZmC UUCCUGCGCAGCUUAGGUGGAAGGCGAAGAAGGCCCCCUUCCGGGGGGGCCGA-GCCA-UCAGUGAGAU-ACCACUCUGGAA
  25. liC UUCUUGCGCAGCUUAGGUGGAAGGCAAAGAAGGCCCCU-UCUG-GGCGGUGGGAG-CA-UCAGUGAAAU-ACCACUCUAGAA
  26. toC UUCCUGCGCAGCUUAGGUGGAAGGCGAAGAAGGCCUCCUUCCGGGGGGGCCCGAGCCA-UCAGUGAGAU-ACCACUCUGGAA
  27. ChC UUCUUGCGCAGCU-AGGUGGGAGGCGUUGAUAAUUCUCUUCCGGGAGAGUUGGAGCCA-UCAGUGAGAGAACCACUCUGGAG
  28. CrC UUCUUGCGCAGCCUAGGUGGGAGGCUAUGAAGAUUACCUUCCGGGGUAAUUAGAGCCG-UCAUUGAGAG-ACCACUCUGGAA
  29. msk 1111111111111111111111111111111111111111111111111111111111 1111111111 111111111111
  30. ---+----------------------------------------------------------------------------------
  31.    |0000000000000000000000000000000000000000000000000000000000000000000000000000000000
  32.    |0000000001111111111222222222233333333334444444444555555555566666666667777777777888
  33.    |1234567890123456789012345678901234567890123456789012345678901234567890123456789012
  34. ---+----------------------------------------------------------------------------------
  35. 001|-.........................................................-..........-............
  36. 002|--........................................................-..........-............
  37. 003|---.......................................................-..........-............
  38. 004|----......................................................-..........-............
  39. 005|-----o...oo..+oo.o+o.oo.o...oo..........+..+........++o.o.-.o..oo..o.-oo+o..oo....
  40. 006|------...oo..+oo.o+o.oo.o...oo..........+..+........++o.o.-.o..oo..o.-oo+o..oo....
  41. 007|-------................................*..*...............-..........-............
  42. 008|--------..........+.......................................-......*...-..+.........
  43. 009|---------.................................................-.......+..-............
  44. 010|----------o..+oo.o+o.oo.o...oo..........+..+........++o.o.-.o..oo..o.-oo+o..oo....
  45. 011|-----------..+oo.o+o.oo.o...oo..........+..+........++o.o.-.o..oo..o.-oo+o..oo....
  46. 012|------------+.............................................-..........-............
  47. 013|-------------.............................................-..........-............
  48. 014|--------------++.+.+.++.+...++........................+.+.-.+..++..++-++.+..++....
  49. 015|---------------o.o+o.oo.o...oo..........+..+........++o.o.-.o..oo..o.-oo+o..oo....
  50. 016|----------------.o+o.oo.o...oo..........+..+........++o.o.-.o..oo..o.-oo+o..oo....
  51. 017|-----------------.........................................-..........-....*.......
  52. 018|------------------+o.oo.o...oo..........+..+........++o.o.-.o..oo..o.-oo+o..oo....
  53. 019|-------------------+.++.+...++........................+.+.-.+..+++.+.-++*+..++....
  54. 020|--------------------.oo.o...oo..........+..+........++o.o.-.o..oo..o.-oo+o..oo....
  55. 021|---------------------.....................................-..........-............
  56. 022|----------------------o.o...oo..........+..+........++o.o.-.o..oo..o.-oo+o..oo....
  57. 023|-----------------------.o...oo..........+..+........++o.o.-.o..oo..o.-oo+o..oo....
  58. 024|------------------------...............................+..-..........-............
  59. 025|-------------------------...oo..........+..+........++o.o.-.o..oo..o.-oo+o..oo....
  60. 026|--------------------------................................-..........-............
  61. 027|---------------------------...............................-..........-............
  62. 028|----------------------------..............................-..........-............
  63. 029|-----------------------------o..........+..+........++o.o.-.o..oo..o.-oo+o..oo....
  64. 030|------------------------------..........+..+........++o.o.-.o..oo..o.-oo+o..oo....
  65. 031|-------------------------------...........................-..........-............
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  72. 038|--------------------------------------......+.............-..........-............
  73. 039|---------------------------------------...................-..........-............
  74. 040|----------------------------------------..*...............-..........-............
  75. 041|-----------------------------------------.............+.+.-.+..++..+.-++.+..++....
  76. 042|------------------------------------------................-..........-............
  77. 043|-------------------------------------------...............-..........-............
  78. 044|--------------------------------------------..........+.+.-.+..++..+.-++.+..++....
  79. 045|---------------------------------------------.............-..........-............
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  86. 052|----------------------------------------------------......-..........-............
  87. 053|-----------------------------------------------------*+.+.-.+..++..+.-++.+..++....
  88. 054|------------------------------------------------------+.+.-.+..++..+.-++.+..++....
  89. 055|-------------------------------------------------------.o.-.o..oo..o.-oo+o..oo....
  90. 056|--------------------------------------------------------..-..........-............
  91. 057|---------------------------------------------------------.-.o..oo..o.-oo+o..oo....
  92. 058|-----------------------------------------------------------..........-............
  93. 059|----------------------------------------------------------------------------------
  94. 060|------------------------------------------------------------.........-............
  95. 061|-------------------------------------------------------------..oo..o.-oo+o..oo....
  96. 062|--------------------------------------------------------------.......-............
  97. 063|---------------------------------------------------------------......-............
  98. 064|----------------------------------------------------------------o..o.-oo+o..oo....
  99. 065|-----------------------------------------------------------------..o.-oo+o..oo....
  100. 066|------------------------------------------------------------------...-..+.........
  101. 067|-------------------------------------------------------------------..-............
  102. 068|--------------------------------------------------------------------.-oo+o..oo....
  103. 069|----------------------------------------------------------------------............
  104. 070|----------------------------------------------------------------------------------
  105. 071|-----------------------------------------------------------------------o+o..oo....
  106. 072|------------------------------------------------------------------------+o..oo....
  107. 073|-------------------------------------------------------------------------+..++....
  108. 074|--------------------------------------------------------------------------..oo....
  109. 075|---------------------------------------------------------------------------.......
  110. 076|----------------------------------------------------------------------------......
  111. 077|-----------------------------------------------------------------------------o....
  112. 078|------------------------------------------------------------------------------....
  113. 079|-------------------------------------------------------------------------------...
  114. 080|--------------------------------------------------------------------------------..
  115. 081|---------------------------------------------------------------------------------.
  116. 082|----------------------------------------------------------------------------------
  117. EOF
  118.